Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THCA rs141873921 chr10:29336030 CCA/C 5.44E-7 503 31.77 30.63 27.1 KM Plot
THCA rs142239882 chr11:77962159 TTA/T 2.18E-5 501 32.48 30.63 23.57 KM Plot
THCA rs142372412 chr19:5965274 T/TA 6.98E-5 500 31.53 33.97 20.2 KM Plot
THCA rs142574158 chr3:53907412 TC/T 3.57E-6 495 31.6 31.77 24.75 KM Plot
THCA rs142756358 chr8:144605095 A/AT 6.34E-6 493 31.7 30.4 26.32 KM Plot
THCA rs142983631 chr19:33392871 CCA/C 5.97E-5 503 31.38 35.4 32.93 KM Plot
THCA rs143056716 chr3:111595528 A/G 6.69E-9 495 31.8 28.12 17.77 KM Plot
THCA rs143259060 chr19:33371248 CAG/C 2.87E-5 501 31.43 34.43 32.93 KM Plot
THCA rs143314876 chr19:33382997 AAT/A 2.88E-5 501 31.45 34.15 32.93 KM Plot
THCA rs143332221 chr3:139259248 CAATA/C 4.25E-10 503 31.47 33.8 19.32 KM Plot
THCA rs143484042 chr16:79276720 A/G 0 494 31.5 32.27 5.8 KM Plot
THCA rs143738985 chr11:123538216 G/GA 1.65E-6 500 31.87 29.95 24.67 KM Plot
THCA rs144243095 chr16:79276510 T/A 5.77E-12 495 31.5 31.67 19.35 KM Plot
THCA rs144350940 chr10:104715531 A/G 2.84E-9 502 31.03 34.83 29.58 KM Plot
THCA rs1445327 chr11:27007113 A/C 0.000113 503 31.5 32.1 21.62 KM Plot